User Guide

• Installation
  • Requirements
  • Build MedSegPy from Source
  • Step-by-Step Guide
  • Configuring Paths (optional)
• Getting Started with MedSegPy
  • Training & Evaluation in Command Line
• Extend MedSegPy’s Defaults
• Use Custom Datasets
  • Data Augmentation
  • Data format
  • Register Dataset
  • Register Metadata for a Dataset
  • Update the Config for New Datasets
• Use Custom Dataloaders
  • How the Existing Dataloader Works
  • Dataloader example
  • Write a Custom Dataloader
  • Use a Custom Dataloader
• Use Models
  • Making a Custom Model
• Training
  • Logging of Metrics
• Evaluation
• Use Configs
  • Use Configs
  • Adding New Fields
  • Best Practice with Configs