MedSegPy
0.0.1
User Guide
API Documentation
MedSegPy
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Index
Index
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B
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C
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G
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__call__() (medsegpy.evaluation.metrics.MetricsManager method)
__getitem__() (medsegpy.data.data_loader.DefaultDataLoader method)
,
[1]
(medsegpy.data.data_loader.PatchDataLoader method)
,
[1]
__init__() (medsegpy.data.data_loader.DataLoader method)
,
[1]
(medsegpy.engine.callbacks.WandBLogger method)
(medsegpy.engine.trainer.DefaultTrainer method)
(medsegpy.evaluation.sem_seg_evaluation.SemSegEvaluator method)
(medsegpy.utils.cluster.Cluster method)
__len__() (medsegpy.data.data_loader.DataLoader method)
,
[1]
A
AdamAccumulate (class in medsegpy.solver.optimizer)
add_metrics() (medsegpy.evaluation.metrics.MetricsManager method)
ASSD (class in medsegpy.evaluation.metrics)
B
BilinearUpsampling (class in medsegpy.modeling.layers.upsampling)
build_data_loader() (in module medsegpy.data.data_loader)
,
[1]
build_encoder_block() (in module medsegpy.modeling.meta_arch.unet)
build_loss() (medsegpy.engine.trainer.DefaultTrainer method)
build_lr_scheduler() (in module medsegpy.solver.build)
build_model() (in module medsegpy.modeling.meta_arch.build)
(medsegpy.modeling.meta_arch.deeplabv3.DeeplabV3Plus method)
build_optimizer() (in module medsegpy.solver.build)
C
class_names (medsegpy.evaluation.metrics.MetricsManager attribute)
clear() (medsegpy.data.catalog.DatasetCatalog static method)
Cluster (class in medsegpy.utils.cluster)
cluster() (medsegpy.utils.cluster.Cluster class method)
convert_path_to_dataset() (medsegpy.data.catalog.MetadataCatalog static method)
create_small_table() (in module medsegpy.utils.logger)
CreateGatingSignal2D (class in medsegpy.modeling.layers.attention)
CreateGatingSignal3D (class in medsegpy.modeling.layers.attention)
CV (class in medsegpy.evaluation.metrics)
D
data() (medsegpy.evaluation.metrics.MetricsManager method)
DataLoader (class in medsegpy.data.data_loader)
,
[1]
DatasetCatalog (class in medsegpy.data.catalog)
DatasetEvaluator (class in medsegpy.evaluation.evaluator)
deeplabv3() (medsegpy.modeling.meta_arch.deeplabv3.DeeplabV3Plus method)
DeeplabV3Plus (class in medsegpy.modeling.meta_arch.deeplabv3)
DeepSupervision2D (class in medsegpy.modeling.layers.attention)
DeepSupervision3D (class in medsegpy.modeling.layers.attention)
default_argument_parser() (in module medsegpy.engine.defaults)
default_exp_name() (in module medsegpy.engine.defaults)
default_setup() (in module medsegpy.engine.defaults)
DefaultDataLoader (class in medsegpy.data.data_loader)
,
[1]
DefaultTrainer (class in medsegpy.engine.trainer)
delete() (medsegpy.utils.cluster.Cluster method)
display_name() (medsegpy.evaluation.metrics.Metric method)
DSC (class in medsegpy.evaluation.metrics)
E
evaluate() (medsegpy.evaluation.evaluator.DatasetEvaluator method)
(medsegpy.evaluation.sem_seg_evaluation.SemSegEvaluator method)
F
filepath() (medsegpy.utils.cluster.Cluster method)
filter_dataset() (in module medsegpy.data.build)
from_config() (medsegpy.utils.cluster.Cluster class method)
G
get() (medsegpy.data.catalog.DatasetCatalog static method)
(medsegpy.data.catalog.MetadataCatalog static method)
get_available_gpus() (in module medsegpy.utils.dl_utils)
get_config() (medsegpy.solver.optimizer.AdamAccumulate method)
get_sem_seg_dataset_dicts() (in module medsegpy.data.build)
get_stats_string() (in module medsegpy.evaluation.sem_seg_evaluation)
get_updates() (medsegpy.solver.optimizer.AdamAccumulate method)
get_valid_subdirs() (in module medsegpy.utils.dl_utils)
get_weights() (in module medsegpy.utils.dl_utils)
GridAttentionModule2D (class in medsegpy.modeling.layers.attention)
GridAttentionModule3D (class in medsegpy.modeling.layers.attention)
I
inference() (medsegpy.data.data_loader.DataLoader method)
,
[1]
inference_on_dataset() (in module medsegpy.evaluation.evaluator)
L
list() (medsegpy.data.catalog.DatasetCatalog static method)
log_every_n() (in module medsegpy.utils.logger)
log_every_n_seconds() (in module medsegpy.utils.logger)
log_first_n() (in module medsegpy.utils.logger)
LossHistory (class in medsegpy.engine.callbacks)
lr_callback() (in module medsegpy.engine.callbacks)
M
MaxPooling2D (class in medsegpy.modeling.layers.pooling)
medsegpy.data.build (module)
medsegpy.data.catalog (module)
medsegpy.data.data_loader (module)
,
[1]
medsegpy.data.transforms (module)
medsegpy.engine (module)
medsegpy.engine.callbacks (module)
medsegpy.engine.defaults (module)
medsegpy.engine.trainer (module)
medsegpy.evaluation.evaluator (module)
medsegpy.evaluation.metrics (module)
medsegpy.evaluation.sem_seg_evaluation (module)
medsegpy.modeling.layers.attention (module)
medsegpy.modeling.layers.pooling (module)
medsegpy.modeling.layers.upsampling (module)
medsegpy.modeling.meta_arch.build (module)
medsegpy.modeling.meta_arch.deeplabv3 (module)
medsegpy.modeling.meta_arch.unet (module)
medsegpy.solver.build (module)
medsegpy.solver.lr_scheduler (module)
medsegpy.solver.optimizer (module)
medsegpy.utils.cluster (module)
medsegpy.utils.dl_utils (module)
medsegpy.utils.env (module)
medsegpy.utils.logger (module)
MetadataCatalog (class in medsegpy.data.catalog)
Metric (class in medsegpy.evaluation.metrics)
metrics() (medsegpy.evaluation.metrics.MetricsManager method)
MetricsManager (class in medsegpy.evaluation.metrics)
MultiAttentionModule2D (class in medsegpy.modeling.layers.attention)
MultiAttentionModule3D (class in medsegpy.modeling.layers.attention)
N
N5dDataLoader (class in medsegpy.data.data_loader)
,
[1]
P
PatchDataLoader (class in medsegpy.data.data_loader)
,
[1]
process() (medsegpy.evaluation.evaluator.DatasetEvaluator method)
(medsegpy.evaluation.sem_seg_evaluation.SemSegEvaluator method)
R
register() (medsegpy.data.catalog.DatasetCatalog static method)
relu6() (medsegpy.modeling.meta_arch.deeplabv3.DeeplabV3Plus method)
remove_metrics() (medsegpy.evaluation.metrics.MetricsManager method)
reset() (medsegpy.evaluation.evaluator.DatasetEvaluator method)
S
S25dDataLoader (class in medsegpy.data.data_loader)
,
[1]
save() (medsegpy.utils.cluster.Cluster method)
save_dir (medsegpy.utils.cluster.Cluster attribute)
scan_summary() (medsegpy.evaluation.metrics.MetricsManager method)
SemSegEvaluator (class in medsegpy.evaluation.sem_seg_evaluation)
sep_conv_bn() (medsegpy.modeling.meta_arch.deeplabv3.DeeplabV3Plus method)
set_cluster() (in module medsegpy.utils.cluster)
set_working_cluster() (medsegpy.utils.cluster.Cluster static method)
setup_logger (in module medsegpy.utils.logger)
step_decay() (in module medsegpy.solver.lr_scheduler)
summary() (medsegpy.evaluation.metrics.MetricsManager method)
T
train() (medsegpy.engine.trainer.DefaultTrainer method)
U
UpSampling2D (class in medsegpy.modeling.layers.pooling)
V
VOE (class in medsegpy.evaluation.metrics)
W
WandBLogger (class in medsegpy.engine.callbacks)